Shape and volume of chambers

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Calculation of internal chamber volume

 

 

 

1.Program à channel finder of 3V:Voss Volume Voxelator

 

(http://3vee.molmovdb.org/channelFinder.php) (http://3vee.molmovdb.org/에서는 다양한 surface계산이 가능)

 

2.예에서 Ferritin internal chamber를 선택하여 단백질 내부의 거대 chamber계산에 적합한 parameter 얻기

 

(내 목적과 비슷한 예를 선택하는 것이 critical point 였음)

 

 input

 

citation: 
'3V: cavity, channel and cleft volume calculator and extractor' 
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562

 

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by Neil R. Voss and Mark Gerstein